PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6651_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 516aa    MW: 56168.1 Da    PI: 6.4008
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6651_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.58.7e-17336382455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+ksLq
  RrC6651_p1 336 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKSLQ 382
                 6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.67E-18328386No hitNo description
Gene3DG3DSA:4.10.280.101.2E-20329390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-21329395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.584332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-14336382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MPLFELFRLS KAAQDNNTSP PVDEVVELVW ENGQISTQSR SNNIPPQHIV HHRGTSSTPR  60
ETGNTSKTTL VDEIPMSVPS LMTGLSQDDD FVPWLNHHHH QSLDGYCSEF LRDVSPVTVN  120
EQEEDTVRRR NNGNGSASSS RYNGSQSHSL YGTDRARDPV SQPETTQEPL VTTSNKPGLV  180
NFSHFLRPAT LGKSTNNNNA QGSKEKSPQT PPNVFQTRVL GGANKDSEDK VVNESVASDM  240
PKDNQKASED SGRKEQESEK AVVCSSVGSG NSLDGPTSES PSLSVKRKHS DVDCHSECSF  300
FNVVEQDVEG ESGDGRKEAA PSRTGTGSKR SRSAEVHNLS ERRRRDRINE KMRALQELIP  360
NCNKVDKASM LDEAIEYLKS LQLQVQIMSM ASGYYMPPVM FPPGMGHYPA AAMAMGMGMP  420
YAMGLPDMSR GGPLVNNGPQ FHVPGMQQPV GMGIPRVSGG GFFTGSSSTM EMNKSEDGST  480
RDLSGAAKDQ TTTKDNNSLR PIKRKQASSD QFCGSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340345ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599535.10.0PREDICTED: transcription factor PIF3-like
SwissprotO805360.0PIF3_ARATH; Transcription factor PIF3
TrEMBLA0A078GBA10.0A0A078GBA1_BRANA; BnaC08g42700D protein
TrEMBLA0A0D3DYB30.0A0A0D3DYB3_BRAOL; Uncharacterized protein
STRINGBra031668.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.20.0phytochrome interacting factor 3